Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs72912535 | chr6:90159762 | A/G | 0.000244 | 488 | 15.63 | 16.38 | 19.73 | KM Plot |
| THCA | rs72912551 | chr6:90178347 | C/T | 0.000318 | 486 | 16.07 | 14.38 | 19.73 | KM Plot |
| THCA | rs72957988 | chr18:32733239 | C/G | 7.24E-6 | 480 | 15.93 | 15.57 | 14.17 | KM Plot |
| THCA | rs7296509 | chr12:109522412 | T/C | 2.67E-6 | 468 | 15.9 | 16.97 | 8.62 | KM Plot |
| THCA | rs72968745 | chr11:93821228 | A/T | 4.82E-5 | 487 | 15.67 | 16.73 | 8.42 | KM Plot |
| THCA | rs72970318 | chr1:91810024 | A/G | 7.89E-6 | 489 | 15.68 | 17 | 17.77 | KM Plot |
| THCA | rs72970328 | chr1:91819535 | G/A | 7.73E-6 | 490 | 15.68 | 16.97 | 17.77 | KM Plot |
| THCA | rs72970335 | chr1:91825625 | T/A | 7.73E-6 | 490 | 15.68 | 16.97 | 17.77 | KM Plot |
| THCA | rs72970448 | chr6:119280162 | C/T | 0.000297 | 489 | 16.37 | 14.28 | 21.77 | KM Plot |
| THCA | rs72970792 | chr11:93880832 | C/T | 8.93E-5 | 479 | 15.23 | 17.17 | 10.5 | KM Plot |
| THCA | rs72973982 | chr2:237979573 | C/A | 0.000161 | 489 | 15.67 | 16.62 | 16.48 | KM Plot |
| THCA | rs72973988 | chr2:237979942 | C/T | 0.000175 | 487 | 15.33 | 16.62 | 16.48 | KM Plot |
| THCA | rs72973992 | chr2:237988020 | T/C | 0.000172 | 485 | 15.28 | 16.37 | 16.48 | KM Plot |
| THCA | rs72973999 | chr2:237997948 | C/T | 5.07E-8 | 490 | 15.68 | 16.37 | 33.97 | KM Plot |
| THCA | rs72975938 | chr3:127651375 | T/A | 0 | 488 | 16.37 | 14.58 | 6.03 | KM Plot |